JAVA

blast multiple protein files

proteins = Channel.fromPath( '/some/path/*.fa' )

process blastThemAll {
  input:
  path query_file from proteins

  "blastp -query ${query_file} -db nr"
}

blast multiple protein files

input:
    path query_file name 'query.fa' from proteins

blast multiple protein files

input:
    path 'query.fa' from proteins

blast multiple protein files

proteins = Channel.fromPath( '/some/path/*.fa' )

process blastThemAll {
  input:
  path 'query.fa' from proteins

  "blastp -query query.fa -db nr"
}