PYTHON

Watershed Segmentation

# SEGMENTATION
import numpy as np
import cv2
from matplotlib import pyplot as plt
img = cv2.imread(r'C33P1thinF_IMG_20150619_114756a_cell_181.png')
b,g,r = cv2.split(img)
rgb_img = cv2.merge([r,g,b])
gray = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY)
ret, thresh = cv2.threshold(gray,0,255,cv2.THRESH_BINARY_INV+cv2.THRESH_OTSU)
plt.subplot(211),plt.imshow(closing, 'gray')
plt.title("morphologyEx:Closing:2x2"), plt.xticks([]), plt.yticks([])
plt.subplot(212),plt.imshow(sure_bg, 'gray')
plt.imsave(r'dilation.png',sure_bg)
plt.title("Dilation"), plt.xticks([]), plt.yticks([])
plt.tight_layout()
plt.show()